MLOC_56905 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.41623.143283.232782.59524
LEAShoots from the seedlings (10 cm shoot stage)1.515921.227011.127481.11191
INF1Young developing inflorescences (5mm)2.586711.890012.809761.88327
INF2Developing inflorescences (1-1.5 cm)1.974582.185061.89042.16784
ROORoots from the seedlings (10 cm shoot stage)3.036346.129364.726086.65799
NODDeveloping tillers at six leaf stage, 3rd internode1.918142.457521.158957.62921
CAR5Developing grain, bracts removed (5 DPA)1.15051.404231.496311.2699
CAR15Developing grain, bracts removed (15 DPA)0.2821340.4380560.2383270.697557



CDS Structure of MLOC_56905






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56905.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56905.2CUST_13599_PI427708080AvailableAvailablecontig_41236 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05620.1 -2 0.0 1363 710/995 (71%) 13101.m00542 protein NBS-LRR disease resistance protein, putative
TAIR PP10 AT3G14470.1 -2 6e-75 272 251/938 (27%) NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054