MLOC_56893 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.0432416.37914.410512.7437
LEAShoots from the seedlings (10 cm shoot stage)16.287811.578610.807210.931
INF1Young developing inflorescences (5mm)9.6045510.061411.3087.48834
INF2Developing inflorescences (1-1.5 cm)10.841410.478111.137911.1698
ROORoots from the seedlings (10 cm shoot stage)5.149988.897788.245319.83188
NODDeveloping tillers at six leaf stage, 3rd internode16.483117.520515.845657.397
CAR5Developing grain, bracts removed (5 DPA)8.563917.97429.655868.04676
CAR15Developing grain, bracts removed (15 DPA)4.713554.330514.628429.2063



CDS Structure of MLOC_56893






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56893.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370967NoneNoneNoneNone
MLOC_56893.7CUST_3677_PI427708080AvailableAvailablecontig_41225 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46030.1 -3 0.0 1101 613/1148 (53%) 13105.m04899 protein myosin head family protein, expressed
TAIR PP10 AT1G54560.1 -3 2e-148 492 303/691 (44%) | Symbols: XIE, ATXIE | Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529