- Predicted Gene MLOC_56888
MLOC_56888 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.86694 | 5.56013 | 5.75575 | 5.15893 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 4.85398 | 3.85317 | 5.26904 | 3.84968 |
| INF1 | Young developing inflorescences (5mm) | 9.1709 | 11.2651 | 12.0054 | 8.6805 |
| INF2 | Developing inflorescences (1-1.5 cm) | 13.1022 | 13.0118 | 11.4008 | 13.0503 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 6.21256 | 5.36788 | 6.69946 | 6.19147 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 4.37387 | 5.81132 | 7.2465 | 17.2905 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 5.69858 | 4.80987 | 5.90969 | 4.82126 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.42418 | 2.89721 | 1.16978 | 5.29362 |
CDS Structure of MLOC_56888
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56888.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g57090.1 |
-3 |
8e-121 |
357 |
179/238 (75%) |
13103.m06254 protein arv1, putative, expressed |
| TAIR PP10 |
AT4G01510.1 |
-3 |
2e-58 |
194 |
99/223 (44%) |
| Symbols: ARV2 | Arv1-like protein | chr4:642755-644190 FORWARD LENGTH=228 |
