- Predicted Gene MLOC_56864
MLOC_56864 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 10.6714 | 8.84994 | 8.70418 | 9.42192 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 5.45647 | 5.58369 | 5.268 | 4.63558 |
INF1 | Young developing inflorescences (5mm) | 19.0849 | 19.7672 | 18.4875 | 16.7601 |
INF2 | Developing inflorescences (1-1.5 cm) | 18.4444 | 19.1538 | 15.4028 | 20.1596 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.76459 | 6.89505 | 9.32132 | 9.35184 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.93585 | 2.33599 | 6.15015 | 10.139 |
CAR5 | Developing grain, bracts removed (5 DPA) | 11.7079 | 12.6766 | 14.2254 | 12.7876 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.67739 | 3.88969 | 3.00879 | 8.73366 |
CDS Structure of MLOC_56864
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56864.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g01020.1 |
-2 |
7e-48 |
167 |
139/259 (54%) |
13111.m00003 protein RNA recognition motif containing protein, putative, expressed |
TAIR PP10 |
AT5G02530.2 |
-2 |
4e-36 |
136 |
131/293 (45%) |
RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:564332-565776 REVERSE LENGTH=290 |