MLOC_56858 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.483333.919763.456652.67918
LEAShoots from the seedlings (10 cm shoot stage)3.351192.025712.187721.96016
INF1Young developing inflorescences (5mm)3.377172.906463.473032.40746
INF2Developing inflorescences (1-1.5 cm)4.304534.335343.990594.15442
ROORoots from the seedlings (10 cm shoot stage)1.841432.734651.313732.43944
NODDeveloping tillers at six leaf stage, 3rd internode1.955982.981831.385267.37751
CAR5Developing grain, bracts removed (5 DPA)5.835035.409136.302144.75908
CAR15Developing grain, bracts removed (15 DPA)4.030243.161574.142347.92961



CDS Structure of MLOC_56858






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56858.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56858.2NoneAvailableAvailablecontig_41197 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g24560.1 -2 1e-16 86 44/48 (92%) 13111.m02341 protein protein transport protein, putative, expressed
TAIR PP10 AT1G05520.1 -2 7e-16 83 42/56 (75%) Sec23/Sec24 protein transport family protein | chr1:1631126-1635703 REVERSE LENGTH=783