MLOC_56833 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.844615.996417.044714.9986
LEAShoots from the seedlings (10 cm shoot stage)34.205625.278926.236723.9161
INF1Young developing inflorescences (5mm)4.698783.831273.600673.41595
INF2Developing inflorescences (1-1.5 cm)4.343545.250825.715895.37363
ROORoots from the seedlings (10 cm shoot stage)11.852117.160111.634818.5119
NODDeveloping tillers at six leaf stage, 3rd internode59.846562.581356.3463191.825
CAR5Developing grain, bracts removed (5 DPA)19.045719.935320.509118.8365
CAR15Developing grain, bracts removed (15 DPA)2.750822.722842.064176.12006



CDS Structure of MLOC_56833






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56833.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356268NoneNoneNoneNone
MLOC_56833.1CUST_3669_PI427708080AvailableAvailablecontig_41188 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g39220.1 -1 0.0 1201 588/663 (89%) 13111.m03869 protein acyl-coenzyme A oxidase, putative, expressed
TAIR PP10 AT5G65110.1 -1 0.0 1061 502/642 (78%) | Symbols: ACX2, ATACX2 | acyl-CoA oxidase 2 | chr5:26009821-26012482 REVERSE LENGTH=692