- Predicted Gene MLOC_56830
MLOC_56830 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_56830_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_56830_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.03613 | 0.668704 | 0.846712 | 0.746933 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.28596 | 0.989137 | 2.61173 | 1.14268 |
INF1 | Young developing inflorescences (5mm) | 1.74441 | 1.85388 | 1.06708 | 1.34893 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.83181 | 1.41811 | 1.30315 | 1.68447 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.591743 | 0.163761 | 0.679499 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.607586 | 0.898325 | 0.804219 | 1.85383 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.11263 | 1.25412 | 0.696418 | 0.996845 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0398085 | 0.197208 | 0.114372 | 0.305698 |
CDS Structure of MLOC_56830
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56830.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g22060.1 |
+1 |
1e-65 |
211 |
120/160 (75%) |
13102.m02471 protein expressed protein |
TAIR PP10 |
AT1G26180.1 |
+1 |
2e-45 |
158 |
74/105 (70%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr1:9054824-9056526 FORWARD LENGTH=289 |