MLOC_56830 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.036130.6687040.8467120.746933
LEAShoots from the seedlings (10 cm shoot stage)1.285960.9891372.611731.14268
INF1Young developing inflorescences (5mm)1.744411.853881.067081.34893
INF2Developing inflorescences (1-1.5 cm)1.831811.418111.303151.68447
ROORoots from the seedlings (10 cm shoot stage)00.5917430.1637610.679499
NODDeveloping tillers at six leaf stage, 3rd internode0.6075860.8983250.8042191.85383
CAR5Developing grain, bracts removed (5 DPA)1.112631.254120.6964180.996845
CAR15Developing grain, bracts removed (15 DPA)0.03980850.1972080.1143720.305698



CDS Structure of MLOC_56830






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56830.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56830.1NoneAvailableAvailablecontig_41188 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g22060.1 +1 1e-65 211 120/160 (75%) 13102.m02471 protein expressed protein
TAIR PP10 AT1G26180.1 +1 2e-45 158 74/105 (70%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr1:9054824-9056526 FORWARD LENGTH=289