MLOC_56801 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.10258900.1022940.084138
LEAShoots from the seedlings (10 cm shoot stage)0.3356010.1704790.2799750.232554
INF1Young developing inflorescences (5mm)0.5757880.3171350.687620.41023
INF2Developing inflorescences (1-1.5 cm)0.1670220.2479040.2332890.241512
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.15220.1598540.0872310.507764
CAR5Developing grain, bracts removed (5 DPA)1.54912.24772.109891.93028
CAR15Developing grain, bracts removed (15 DPA)4.469573.50794.462479.37574



CDS Structure of MLOC_56801






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56801.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56801.2CUST_7842_PI427708083AvailableAvailablecontig_41160 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g51084.8 -3 8e-173 520 250/287 (87%) 13106.m10582 protein 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
TAIR PP10 AT2G36390.1 -3 7e-117 376 180/303 (59%) | Symbols: SBE2.1, BE3 | starch branching enzyme 2.1 | chr2:15264283-15269940 FORWARD LENGTH=858