- Predicted Gene MLOC_56800
MLOC_56800 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_56800_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_56800_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 11.7937 | 19.493 | 17.0438 | 16.3164 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 11.0967 | 9.12553 | 5.58981 | 7.23593 |
INF1 | Young developing inflorescences (5mm) | 24.371 | 26.3871 | 24.3759 | 20.193 |
INF2 | Developing inflorescences (1-1.5 cm) | 21.2605 | 23.3375 | 21.0153 | 23.0774 |
ROO | Roots from the seedlings (10 cm shoot stage) | 4.82469 | 9.27451 | 8.51466 | 9.90191 |
NOD | Developing tillers at six leaf stage, 3rd internode | 11.951 | 10.8933 | 9.43365 | 34.0762 |
CAR5 | Developing grain, bracts removed (5 DPA) | 31.211 | 29.6182 | 29.6102 | 27.7703 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1035.19 | 1141.35 | 918.02 | 2282.03 |
CDS Structure of MLOC_56800
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56800.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g51084.8 |
-3 |
0.0 |
896 |
429/506 (85%) |
13106.m10582 protein 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed |
TAIR PP10 |
AT5G03650.1 |
-3 |
0.0 |
543 |
261/446 (59%) |
| Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805 |