MLOC_56800 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.793719.49317.043816.3164
LEAShoots from the seedlings (10 cm shoot stage)11.09679.125535.589817.23593
INF1Young developing inflorescences (5mm)24.37126.387124.375920.193
INF2Developing inflorescences (1-1.5 cm)21.260523.337521.015323.0774
ROORoots from the seedlings (10 cm shoot stage)4.824699.274518.514669.90191
NODDeveloping tillers at six leaf stage, 3rd internode11.95110.89339.4336534.0762
CAR5Developing grain, bracts removed (5 DPA)31.21129.618229.610227.7703
CAR15Developing grain, bracts removed (15 DPA)1035.191141.35918.022282.03



CDS Structure of MLOC_56800






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56800.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358373NoneNoneNoneNone
MLOC_56800.2CUST_3665_PI427708080AvailableAvailablecontig_41160 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g51084.8 -3 0.0 896 429/506 (85%) 13106.m10582 protein 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
TAIR PP10 AT5G03650.1 -3 0.0 543 261/446 (59%) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805