MLOC_56794 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.345241.162190.8039621.40111
LEAShoots from the seedlings (10 cm shoot stage)4.797566.168748.651646.68211
INF1Young developing inflorescences (5mm)1.03631.475431.229561.27898
INF2Developing inflorescences (1-1.5 cm)1.533261.082940.9399861.48126
ROORoots from the seedlings (10 cm shoot stage)0.9684140.2333260.5153530.491353
NODDeveloping tillers at six leaf stage, 3rd internode1.444353.593173.1850712.4781
CAR5Developing grain, bracts removed (5 DPA)1.784911.151760.8730661.44637
CAR15Developing grain, bracts removed (15 DPA)0.2485710.3338330.2438150.73128



CDS Structure of MLOC_56794






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56794.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56794.1CUST_12797_PI427708083AvailableAvailablecontig_41158 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g15460.2 +1 9e-34 130 71/89 (80%) 13108.m01652 protein preprotein translocase subunit secY, putative, expressed
TAIR PP10 AT2G18710.1 +1 5e-32 126 64/71 (90%) | Symbols: SCY1 | SECY homolog 1 | chr2:8112231-8114452 REVERSE LENGTH=551