MLOC_56793 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6479061.026160.7784370.786269
LEAShoots from the seedlings (10 cm shoot stage)0.6521260.2534410.3640460.345921
INF1Young developing inflorescences (5mm)3.13162.659522.506942.14773
INF2Developing inflorescences (1-1.5 cm)1.847262.185251.833021.95482
ROORoots from the seedlings (10 cm shoot stage)0.5254131.149610.610831.01826
NODDeveloping tillers at six leaf stage, 3rd internode0.6442620.5607260.7562831.6212
CAR5Developing grain, bracts removed (5 DPA)2.470962.242642.563252.06434
CAR15Developing grain, bracts removed (15 DPA)0.2587480.3062940.1996990.574134



CDS Structure of MLOC_56793






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56793.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375452NoneNoneNoneNone
MLOC_56793.3CUST_3664_PI427708080AvailableAvailablecontig_41156 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g29430.2 -1 0.0 884 472/643 (73%) 13101.m03060 protein tetratricopeptide-like helical, putative, expressed
TAIR PP10 AT5G19020.1 -1 4e-160 495 284/643 (44%) | Symbols: MEF18 | mitochondrial editing factor 18 | chr5:6352771-6354828 REVERSE LENGTH=685