MLOC_56784 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains63.537252.401546.271860.1669
LEAShoots from the seedlings (10 cm shoot stage)37.36424.669131.088226.8345
INF1Young developing inflorescences (5mm)87.503486.028399.336787.8982
INF2Developing inflorescences (1-1.5 cm)82.466373.174977.4401100.553
ROORoots from the seedlings (10 cm shoot stage)69.396953.176566.374875.8218
NODDeveloping tillers at six leaf stage, 3rd internode8.7556811.539246.730560.9705
CAR5Developing grain, bracts removed (5 DPA)29.038737.01425.925538.4842
CAR15Developing grain, bracts removed (15 DPA)7.716656.335126.4569319.1076



CDS Structure of MLOC_56784






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56784.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376688NoneNoneNoneNone
MLOC_56784.2CUST_3662_PI427708080AvailableAvailablecontig_41146 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38190.1 -1 3e-71 224 154/196 (79%) 13102.m04200 protein expressed protein
TAIR PP10 AT2G31410.1 -1 6e-38 137 91/151 (60%) unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink). | chr2:13392220-13392819 REVERSE LENGTH=199