MLOC_56778 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains344.786280.287293.146330.472
LEAShoots from the seedlings (10 cm shoot stage)99.612594.3866134.62898.5018
INF1Young developing inflorescences (5mm)43.20846.235847.825942.0777
INF2Developing inflorescences (1-1.5 cm)52.760442.691754.022558.1629
ROORoots from the seedlings (10 cm shoot stage)552.382310.398333.708446.875
NODDeveloping tillers at six leaf stage, 3rd internode169.094225.506145.602704.546
CAR5Developing grain, bracts removed (5 DPA)165.217181.722183.767193.081
CAR15Developing grain, bracts removed (15 DPA)88.898382.899374.2679212.373



CDS Structure of MLOC_56778






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56778.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56778.1CUST_13583_PI427708080AvailableAvailablecontig_41142 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g38870.5 +2 1e-168 486 252/263 (96%) 13104.m03746 protein 14-3-3 protein, putative, expressed
TAIR PP10 AT3G02520.1 +2 1e-148 435 216/256 (84%) | Symbols: GRF7, GF14 NU | general regulatory factor 7 | chr3:526800-527915 REVERSE LENGTH=265