MLOC_56775 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.249866.970957.356867.92425
LEAShoots from the seedlings (10 cm shoot stage)11.315119.597726.858517.2531
INF1Young developing inflorescences (5mm)2.124482.93245.00793.03189
INF2Developing inflorescences (1-1.5 cm)1.954071.715542.599712.31971
ROORoots from the seedlings (10 cm shoot stage)27.8918.85816.266324.6738
NODDeveloping tillers at six leaf stage, 3rd internode19.168414.36617.762647.3743
CAR5Developing grain, bracts removed (5 DPA)10.49437.401217.574998.63751
CAR15Developing grain, bracts removed (15 DPA)43.566143.287642.1091108.135



CDS Structure of MLOC_56775






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56775.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371429NoneNoneNoneNone
MLOC_56775.1CUST_3660_PI427708080AvailableAvailablecontig_41137 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g55560.1 +3 0.0 595 298/362 (82%) 13102.m06374 protein protein phosphatase 2C, putative, expressed
TAIR PP10 AT2G25620.1 +3 1e-114 353 177/307 (58%) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392