MLOC_56768 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains75.7025113.943102.147109.167
LEAShoots from the seedlings (10 cm shoot stage)65.155444.373938.490446.1905
INF1Young developing inflorescences (5mm)187.667192.964180.516168.052
INF2Developing inflorescences (1-1.5 cm)149.837170.403162.49186.748
ROORoots from the seedlings (10 cm shoot stage)48.3069101.1375.8346126.487
NODDeveloping tillers at six leaf stage, 3rd internode24.821725.777628.9128101.127
CAR5Developing grain, bracts removed (5 DPA)126.76122.041124.04129.01
CAR15Developing grain, bracts removed (15 DPA)41.371339.000634.721392.6703



CDS Structure of MLOC_56768






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56768.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250803.1NoneNoneNoneNone
MLOC_56768.1CUST_18149_PI427708080AvailableAvailablecontig_41127 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41960.1 -1 0.0 1270 623/721 (86%) 13110.m03933 protein eukaryotic translation initiation factor 3 subunit B, putative, expressed
TAIR PP10 AT5G27640.1 -1 0.0 1047 490/672 (73%) | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 | translation initiation factor 3B1 | chr5:9781207-9784759 REVERSE LENGTH=712