MLOC_56767 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.612090.4302850.1683790.481069
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.4616410.29035800.61684
NODDeveloping tillers at six leaf stage, 3rd internode00.05254240.1543590.428154
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)00.03265960.04131430.259996



CDS Structure of MLOC_56767






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56767.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56767.1CUST_7837_PI427708083AvailableAvailablecontig_41127 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15800.1 +1 1e-18 84 38/78 (49%) 13101.m01755 protein conserved hypothetical protein
TAIR PP10 AT1G78922.1 +1 3e-14 70 27/61 (44%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29676949-29677815 REVERSE LENGTH=222