MLOC_56743 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.633135.343733.644841.0929
LEAShoots from the seedlings (10 cm shoot stage)25.808720.176724.327923.2609
INF1Young developing inflorescences (5mm)67.525355.112348.919154.627
INF2Developing inflorescences (1-1.5 cm)48.267950.608148.949962.6426
ROORoots from the seedlings (10 cm shoot stage)14.319535.319726.69949.2319
NODDeveloping tillers at six leaf stage, 3rd internode1.421112.056586.5073711.5515
CAR5Developing grain, bracts removed (5 DPA)40.058138.774739.012645.6351
CAR15Developing grain, bracts removed (15 DPA)14.11413.723811.613535.1125



CDS Structure of MLOC_56743






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56743.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354422NoneNoneNoneNone
MLOC_56743.1CUST_3657_PI427708080AvailableAvailablecontig_41102 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g27730.1 -2 0.0 799 438/537 (82%) 13101.m02880 protein GTPase of unknown function domain containing protein, putative, expressed
TAIR PP10 AT3G07050.1 -2 0.0 595 330/526 (63%) GTP-binding family protein | chr3:2229602-2232279 REVERSE LENGTH=582