MLOC_56737 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.366826.642046.59836.27924
LEAShoots from the seedlings (10 cm shoot stage)3.272691.704891.973242.05116
INF1Young developing inflorescences (5mm)3.21373.672963.134422.74859
INF2Developing inflorescences (1-1.5 cm)2.752622.65712.994372.93681
ROORoots from the seedlings (10 cm shoot stage)3.794746.880514.782597.54469
NODDeveloping tillers at six leaf stage, 3rd internode8.563166.28736.2500421.3378
CAR5Developing grain, bracts removed (5 DPA)10.17889.590312.04859.95366
CAR15Developing grain, bracts removed (15 DPA)3.700263.763682.982787.7926



CDS Structure of MLOC_56737






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56737.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356065NoneNoneNoneNone
MLOC_56737.5CUST_3656_PI427708080AvailableAvailablecontig_41099 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g59670.1 +3 1e-119 407 285/690 (41%) 13101.m06345 protein expressed protein
TAIR PP10 AT2G32760.2 +3 5e-31 126 89/227 (39%) unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13892642-13894295 FORWARD LENGTH=276