MLOC_56717 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7353080.5793310.8120450.729786
LEAShoots from the seedlings (10 cm shoot stage)0.5320620.2724140.520990.337183
INF1Young developing inflorescences (5mm)0.6847431.339321.302690.953475
INF2Developing inflorescences (1-1.5 cm)1.199771.149011.059341.37473
ROORoots from the seedlings (10 cm shoot stage)1.318050.6651390.7507740.843243
NODDeveloping tillers at six leaf stage, 3rd internode0.1855230.642720.7190731.37789
CAR5Developing grain, bracts removed (5 DPA)0.4776810.6932020.6861140.650259
CAR15Developing grain, bracts removed (15 DPA)0.2175990.142640.1437830.408771



CDS Structure of MLOC_56717






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56717.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56717.1CUST_13573_PI427708080AvailableAvailablecontig_41083 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g34810.1 +1 3e-145 445 254/359 (71%) 13110.m03108 protein expressed protein
TAIR PP10 AT1G73380.1 +1 2e-46 174 128/371 (35%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:27589100-27590657 FORWARD LENGTH=434