MLOC_56713 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains58.924398.357286.909987.5072
LEAShoots from the seedlings (10 cm shoot stage)69.872150.554242.877746.5584
INF1Young developing inflorescences (5mm)94.204584.670265.2369.7009
INF2Developing inflorescences (1-1.5 cm)73.318383.187471.413283.7883
ROORoots from the seedlings (10 cm shoot stage)53.167980.044354.935189.4113
NODDeveloping tillers at six leaf stage, 3rd internode22.74725.614521.793380.4638
CAR5Developing grain, bracts removed (5 DPA)124.054102.95191.0302102.761
CAR15Developing grain, bracts removed (15 DPA)16.751516.072515.828937.4911



CDS Structure of MLOC_56713






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56713.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354374NoneNoneNoneNone
MLOC_56713.2CUST_3651_PI427708080AvailableAvailablecontig_41079 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17310.1 +1 0.0 1907 988/1059 (93%) 13103.m02070 protein calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed
TAIR PP10 AT1G07670.1 +1 0.0 1543 800/1048 (76%) | Symbols: ATECA4, ECA4 | endomembrane-type CA-ATPase 4 | chr1:2370305-2374196 REVERSE LENGTH=1061