MLOC_56703 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains259.234239.375266.402288.461
LEAShoots from the seedlings (10 cm shoot stage)212.50399.3455121.281138.985
INF1Young developing inflorescences (5mm)98.892795.022692.565790.7515
INF2Developing inflorescences (1-1.5 cm)67.953976.719680.277893.2128
ROORoots from the seedlings (10 cm shoot stage)237.604222.349194.017329.082
NODDeveloping tillers at six leaf stage, 3rd internode412.052338.472198.71259.77
CAR5Developing grain, bracts removed (5 DPA)140.184131.508128.429150.636
CAR15Developing grain, bracts removed (15 DPA)15.374215.127717.904340.9689



CDS Structure of MLOC_56703






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56703.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249183.1NoneNoneNoneNone
MLOC_56703.1CUST_3649_PI427708080AvailableAvailablecontig_41067 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37890.1 -2 0.0 734 353/371 (95%) 13111.m03714 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT5G28840.2 -2 0.0 681 326/366 (89%) | Symbols: GME | GDP-D-mannose 3,5-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377