MLOC_56685 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6295290.3625590.2394650.403549
LEAShoots from the seedlings (10 cm shoot stage)0.2814410.16578100.186923
INF1Young developing inflorescences (5mm)00.079386800.0831918
INF2Developing inflorescences (1-1.5 cm)000.1758850.227548
ROORoots from the seedlings (10 cm shoot stage)00.32605700.813436
NODDeveloping tillers at six leaf stage, 3rd internode0.05940760.04897830.07920770.149639
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)00.0797720.1015420.370401



CDS Structure of MLOC_56685






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56685.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56685.1CUST_7828_PI427708083AvailableAvailablecontig_41050 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g04220.1 +1 9e-37 135 95/188 (51%) 13101.m00381 protein DNA binding protein, putative
TAIR PP10 AT1G68390.1 +1 4e-31 119 59/109 (54%) Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:25642838-25645484 FORWARD LENGTH=408