MLOC_56680 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.2592850.1618461.456340.460819
INF1Young developing inflorescences (5mm)00.01651750.05732290.033439
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)00.1061330.1649070.15003
NODDeveloping tillers at six leaf stage, 3rd internode0.7071344.35201012.8124
CAR5Developing grain, bracts removed (5 DPA)0.05230340.1333240.05367080.0766969
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_56680






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56680.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56680.2CUST_7827_PI427708083AvailableAvailablecontig_41048 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g35700.1 -2 3e-148 441 239/384 (62%) 13106.m03686 protein reticuline oxidase-like protein precursor, putative, expressed
TAIR PP10 AT5G44410.1 -2 3e-94 301 190/435 (44%) FAD-binding Berberine family protein | chr5:17891246-17892853 REVERSE LENGTH=535