MLOC_56670 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4874850.5084610.6139750.543345
LEAShoots from the seedlings (10 cm shoot stage)0.3385950.7286341.257830.629393
INF1Young developing inflorescences (5mm)6.372043.799031.813843.5888
INF2Developing inflorescences (1-1.5 cm)0.04370950.04193410.1995730.100219
ROORoots from the seedlings (10 cm shoot stage)0.636470.3117910.142080.359376
NODDeveloping tillers at six leaf stage, 3rd internode4.959751.120640.1448221.94203
CAR5Developing grain, bracts removed (5 DPA)0.3528330.077740500.213285
CAR15Developing grain, bracts removed (15 DPA)00.061056700.245463



CDS Structure of MLOC_56670






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56670.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365861NoneNoneNoneNone
MLOC_56670.1CUST_3642_PI427708080AvailableAvailablecontig_41040 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g50410.1 +2 0.0 561 309/413 (75%) 13101.m05244 protein STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
TAIR PP10 AT4G26890.1 +2 3e-69 233 127/301 (42%) | Symbols: MAPKKK16 | mitogen-activated protein kinase kinase kinase 16 | chr4:13512072-13513406 FORWARD LENGTH=444