MLOC_56655 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.602941.305642.109841.5104
LEAShoots from the seedlings (10 cm shoot stage)73.689213.642622.778633.7491
INF1Young developing inflorescences (5mm)48.07248.548545.732341.3065
INF2Developing inflorescences (1-1.5 cm)57.760652.807251.635963.099
ROORoots from the seedlings (10 cm shoot stage)10.813521.420922.802126.763
NODDeveloping tillers at six leaf stage, 3rd internode44.774537.72487.45579122.145
CAR5Developing grain, bracts removed (5 DPA)35.814538.898940.439740.7642
CAR15Developing grain, bracts removed (15 DPA)4.869353.722484.818510.6637



CDS Structure of MLOC_56655






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56655.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354821NoneNoneNoneNone
MLOC_56655.1CUST_3641_PI427708080AvailableAvailablecontig_41033 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g51840.2 -2 0.0 592 367/576 (64%) 13101.m05415 protein IQ calmodulin-binding motif family protein, putative, expressed
TAIR PP10 AT1G74690.1 -2 1e-55 202 196/584 (34%) | Symbols: IQD31 | IQ-domain 31 | chr1:28061498-28063924 REVERSE LENGTH=587