MLOC_56651 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.91139.029357.192728.84014
LEAShoots from the seedlings (10 cm shoot stage)13.66313.264122.558512.6627
INF1Young developing inflorescences (5mm)9.4401411.067911.67047.83909
INF2Developing inflorescences (1-1.5 cm)9.239829.420168.974869.01479
ROORoots from the seedlings (10 cm shoot stage)10.19947.4519410.79558.61748
NODDeveloping tillers at six leaf stage, 3rd internode13.393415.183512.422342.0596
CAR5Developing grain, bracts removed (5 DPA)8.109558.568557.716886.86367
CAR15Developing grain, bracts removed (15 DPA)3.124383.101153.434336.50022



CDS Structure of MLOC_56651






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56651.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56651.3CUST_13561_PI427708080AvailableAvailablecontig_41028 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g21610.1 +2 2e-109 323 155/171 (91%) 13101.m02298 protein uncharacterized aarF domain-containing protein kinase 4, putative, expressed
TAIR PP10 AT4G01660.1 +2 1e-80 259 118/159 (74%) | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter 1 | chr4:708652-711095 FORWARD LENGTH=623