MLOC_56646 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.03816030.036002200.0484948
ROORoots from the seedlings (10 cm shoot stage)00.049591200.204855
NODDeveloping tillers at six leaf stage, 3rd internode0.037323200.07557480.0551332
CAR5Developing grain, bracts removed (5 DPA)0.603430.9914821.235810.820953
CAR15Developing grain, bracts removed (15 DPA)0.3372280.1825930.1241340.550617



CDS Structure of MLOC_56646






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56646.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56646.1CUST_7823_PI427708083AvailableAvailablecontig_41021 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g50730.1 -1 3e-82 259 147/222 (66%) 13104.m05153 protein RWD domain containing protein, expressed
TAIR PP10 AT1G32340.1 -1 1e-54 194 104/226 (46%) | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663462-11666037 REVERSE LENGTH=688