MLOC_56623 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains50.294538.780243.573348.0775
LEAShoots from the seedlings (10 cm shoot stage)47.734427.227429.403931.1265
INF1Young developing inflorescences (5mm)42.130948.587747.638141.7475
INF2Developing inflorescences (1-1.5 cm)36.233442.19947.354150.4994
ROORoots from the seedlings (10 cm shoot stage)39.424245.005446.15161.6811
NODDeveloping tillers at six leaf stage, 3rd internode126.578121.89111.102431.583
CAR5Developing grain, bracts removed (5 DPA)27.935832.073829.999233.6441
CAR15Developing grain, bracts removed (15 DPA)7.922127.241468.8319420.4189



CDS Structure of MLOC_56623






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56623.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248192.1NoneNoneNoneNone
MLOC_56623.1CUST_3638_PI427708080AvailableAvailablecontig_40999 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g44350.1 -1 9e-147 424 235/268 (88%) 13107.m04667 protein sec20 domain containing protein, expressed
TAIR PP10 AT3G17440.1 -1 2e-118 351 194/263 (74%) | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 | chr3:5969909-5972290 REVERSE LENGTH=269