MLOC_56621 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.084318.34515.438817.1033
LEAShoots from the seedlings (10 cm shoot stage)11.296610.14879.708839.26392
INF1Young developing inflorescences (5mm)43.1245.044845.700837.9675
INF2Developing inflorescences (1-1.5 cm)42.720453.576343.483553.9449
ROORoots from the seedlings (10 cm shoot stage)7.0446612.03849.3719614.3552
NODDeveloping tillers at six leaf stage, 3rd internode3.631914.638517.9566717.5979
CAR5Developing grain, bracts removed (5 DPA)22.902822.762724.145223.7122
CAR15Developing grain, bracts removed (15 DPA)3.228033.777194.158138.47146



CDS Structure of MLOC_56621






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56621.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56621.2CUST_13558_PI427708080AvailableAvailablecontig_40999 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g44360.1 +3 0.0 837 421/560 (75%) 13107.m04668 protein serine/threonine-protein kinase Haspin, putative, expressed
TAIR PP10 AT1G09450.1 +3 3e-170 503 281/557 (50%) Protein kinase superfamily protein | chr1:3049066-3052858 FORWARD LENGTH=599