MLOC_56602 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.538862.347411.896121.90197
LEAShoots from the seedlings (10 cm shoot stage)2.325882.645592.460381.96586
INF1Young developing inflorescences (5mm)1.411691.385551.770351.20957
INF2Developing inflorescences (1-1.5 cm)1.223951.227471.235361.26451
ROORoots from the seedlings (10 cm shoot stage)1.512052.134111.697262.24534
NODDeveloping tillers at six leaf stage, 3rd internode2.202482.920932.400798.23228
CAR5Developing grain, bracts removed (5 DPA)1.047051.336610.9955831.05802
CAR15Developing grain, bracts removed (15 DPA)12.254712.110810.74126.4366



CDS Structure of MLOC_56602






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56602.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364510NoneNoneNoneNone
MLOC_56602.1CUST_3635_PI427708080AvailableAvailablecontig_40983 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g43360.2 +2 0.0 566 305/422 (72%) 13103.m13000 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT2G30580.1 +2 7e-103 339 204/420 (49%) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420