MLOC_56555 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains75.593473.493391.492662.275
LEAShoots from the seedlings (10 cm shoot stage)12.725112.740213.44969.10823
INF1Young developing inflorescences (5mm)7.6965810.296411.12346.05872
INF2Developing inflorescences (1-1.5 cm)5.37714.810324.834644.46083
ROORoots from the seedlings (10 cm shoot stage)12.572714.578715.801413.5346
NODDeveloping tillers at six leaf stage, 3rd internode20.21789.399958.362426.1155
CAR5Developing grain, bracts removed (5 DPA)4.919355.419356.803464.19377
CAR15Developing grain, bracts removed (15 DPA)1.123450.8758180.8478741.76748



CDS Structure of MLOC_56555






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56555.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359230NoneNoneNoneNone
MLOC_56555.1CUST_306_PI427708083AvailableAvailablecontig_40942 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g55780.1 +2 4e-140 419 196/225 (87%) 13101.m05884 protein glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
TAIR PP10 AT5G08030.1 +2 4e-109 337 150/205 (73%) PLC-like phosphodiesterases superfamily protein | chr5:2575152-2576770 REVERSE LENGTH=372