MLOC_56552 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.667946.249894.829375.00232
LEAShoots from the seedlings (10 cm shoot stage)14.248513.396111.241410.8045
INF1Young developing inflorescences (5mm)10.46097.967086.333557.19234
INF2Developing inflorescences (1-1.5 cm)5.120945.034354.852355.32483
ROORoots from the seedlings (10 cm shoot stage)0.5698421.369571.166151.56936
NODDeveloping tillers at six leaf stage, 3rd internode2.973342.746692.991268.6495
CAR5Developing grain, bracts removed (5 DPA)3.678823.66453.971663.76697
CAR15Developing grain, bracts removed (15 DPA)0.8383860.8219670.6418521.82561



CDS Structure of MLOC_56552






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56552.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56552.2CUST_13541_PI427708080AvailableAvailablecontig_40939 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50560.1 -1 0.0 1894 973/1056 (92%) 13102.m05738 protein DSHCT domain containing protein, expressed
TAIR PP10 AT1G70070.1 -1 0.0 1317 695/1061 (66%) | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box helicase, putative | chr1:26390016-26394148 REVERSE LENGTH=1171