- Predicted Gene MLOC_56552
MLOC_56552 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_56552_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_56552_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.66794 | 6.24989 | 4.82937 | 5.00232 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 14.2485 | 13.3961 | 11.2414 | 10.8045 |
INF1 | Young developing inflorescences (5mm) | 10.4609 | 7.96708 | 6.33355 | 7.19234 |
INF2 | Developing inflorescences (1-1.5 cm) | 5.12094 | 5.03435 | 4.85235 | 5.32483 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.569842 | 1.36957 | 1.16615 | 1.56936 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.97334 | 2.74669 | 2.99126 | 8.6495 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.67882 | 3.6645 | 3.97166 | 3.76697 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.838386 | 0.821967 | 0.641852 | 1.82561 |
CDS Structure of MLOC_56552
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56552.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g50560.1 |
-1 |
0.0 |
1894 |
973/1056 (92%) |
13102.m05738 protein DSHCT domain containing protein, expressed |
TAIR PP10 |
AT1G70070.1 |
-1 |
0.0 |
1317 |
695/1061 (66%) |
| Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box helicase, putative | chr1:26390016-26394148 REVERSE LENGTH=1171 |