MLOC_56537 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.718750.9685411.553631.12566
LEAShoots from the seedlings (10 cm shoot stage)1.491872.003664.76381.88355
INF1Young developing inflorescences (5mm)0.0437346000.0396637
INF2Developing inflorescences (1-1.5 cm)00.02178250.1072340.0559192
ROORoots from the seedlings (10 cm shoot stage)10.11516.248475.060895.96004
NODDeveloping tillers at six leaf stage, 3rd internode0.2106590.0800710.006912870.129602
CAR5Developing grain, bracts removed (5 DPA)00.1117930.02740240.0652156
CAR15Developing grain, bracts removed (15 DPA)00.04595830.02781520.124



CDS Structure of MLOC_56537






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56537.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364274NoneNoneNoneNone
MLOC_56537.1CUST_3623_PI427708080AvailableAvailablecontig_40930 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g47880.1 +1 4e-157 463 252/366 (69%) 13105.m05075 protein hypro1, putative, expressed
TAIR PP10 AT5G57500.1 +1 2e-60 208 119/259 (46%) Galactosyltransferase family protein | chr5:23286406-23287525 REVERSE LENGTH=318