MLOC_56536 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains196.2107.213120.529129.387
LEAShoots from the seedlings (10 cm shoot stage)70.730522.823238.262335.1318
INF1Young developing inflorescences (5mm)190.601197.694198.534171.137
INF2Developing inflorescences (1-1.5 cm)111.58126.115140.017140.54
ROORoots from the seedlings (10 cm shoot stage)158.435111.417117.541127.208
NODDeveloping tillers at six leaf stage, 3rd internode3.486513.6235514.024716.1211
CAR5Developing grain, bracts removed (5 DPA)130.715132.978135.354133.456
CAR15Developing grain, bracts removed (15 DPA)55.805751.955838.2003124.025



CDS Structure of MLOC_56536






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56536.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359815NoneNoneNoneNone
MLOC_56536.2CUST_3622_PI427708080AvailableAvailablecontig_40930 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49290.1 +3 0.0 570 283/332 (85%) 13101.m05124 protein WD repeat-containing protein, putative, expressed
TAIR PP10 AT1G18080.1 +3 1e-164 473 235/336 (70%) | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/WD40 repeat-like superfamily protein | chr1:6222325-6223901 FORWARD LENGTH=327