MLOC_56535 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.067819.138819.104816.1876
LEAShoots from the seedlings (10 cm shoot stage)20.486111.249112.695112.0637
INF1Young developing inflorescences (5mm)28.376231.791631.167721.7225
INF2Developing inflorescences (1-1.5 cm)28.285632.782731.163128.917
ROORoots from the seedlings (10 cm shoot stage)13.336719.17815.111319.1125
NODDeveloping tillers at six leaf stage, 3rd internode25.88737.181320.753107.931
CAR5Developing grain, bracts removed (5 DPA)25.339325.37925.878920.8842
CAR15Developing grain, bracts removed (15 DPA)16.404213.482514.063228.4799



CDS Structure of MLOC_56535






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56535.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56535.1CUST_13539_PI427708080AvailableAvailablecontig_409299 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g46892.1 -2 0.0 617 345/423 (82%) 13104.m04737 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT2G45540.1 -2 7e-178 570 309/511 (60%) WD-40 repeat family protein / beige-related | chr2:18757881-18772229 REVERSE LENGTH=2946