MLOC_56500 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains82.000147.532756.903944.1897
LEAShoots from the seedlings (10 cm shoot stage)48.103932.408437.365424.6567
INF1Young developing inflorescences (5mm)26.642724.317425.632616.1285
INF2Developing inflorescences (1-1.5 cm)18.348222.760526.429817.7972
ROORoots from the seedlings (10 cm shoot stage)78.990563.567676.850252.1856
NODDeveloping tillers at six leaf stage, 3rd internode93.335648.192884.4518114.404
CAR5Developing grain, bracts removed (5 DPA)71.808569.044872.398649.0586
CAR15Developing grain, bracts removed (15 DPA)27.866924.189723.851446.7536



CDS Structure of MLOC_56500






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56500.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370386NoneNoneNoneNone
MLOC_56500.1CUST_3617_PI427708080AvailableAvailablecontig_40904 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g02420.1 -2 5e-93 291 146/148 (99%) 13108.m00181 protein OsCML7 - Calmodulin-related calcium sensor protein, expressed
TAIR PP10 AT1G12310.1 -2 3e-69 227 110/147 (75%) Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148