- Predicted Gene MLOC_56500
MLOC_56500 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_56500_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_56500_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 82.0001 | 47.5327 | 56.9039 | 44.1897 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 48.1039 | 32.4084 | 37.3654 | 24.6567 |
INF1 | Young developing inflorescences (5mm) | 26.6427 | 24.3174 | 25.6326 | 16.1285 |
INF2 | Developing inflorescences (1-1.5 cm) | 18.3482 | 22.7605 | 26.4298 | 17.7972 |
ROO | Roots from the seedlings (10 cm shoot stage) | 78.9905 | 63.5676 | 76.8502 | 52.1856 |
NOD | Developing tillers at six leaf stage, 3rd internode | 93.3356 | 48.1928 | 84.4518 | 114.404 |
CAR5 | Developing grain, bracts removed (5 DPA) | 71.8085 | 69.0448 | 72.3986 | 49.0586 |
CAR15 | Developing grain, bracts removed (15 DPA) | 27.8669 | 24.1897 | 23.8514 | 46.7536 |
CDS Structure of MLOC_56500
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56500.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g02420.1 |
-2 |
5e-93 |
291 |
146/148 (99%) |
13108.m00181 protein OsCML7 - Calmodulin-related calcium sensor protein, expressed |
TAIR PP10 |
AT1G12310.1 |
-2 |
3e-69 |
227 |
110/147 (75%) |
Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148 |