MLOC_56471 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.33121.755432.420312.16488
LEAShoots from the seedlings (10 cm shoot stage)2.314745.780236.445884.16079
INF1Young developing inflorescences (5mm)2.265832.633412.597042.20243
INF2Developing inflorescences (1-1.5 cm)1.661491.961371.514071.97451
ROORoots from the seedlings (10 cm shoot stage)3.695424.315223.907954.91969
NODDeveloping tillers at six leaf stage, 3rd internode3.421025.429474.0985916.404
CAR5Developing grain, bracts removed (5 DPA)1.440781.832921.709411.66769
CAR15Developing grain, bracts removed (15 DPA)1.530691.87791.842164.1943



CDS Structure of MLOC_56471






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56471.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56471.1CUST_13527_PI427708080AvailableAvailablecontig_40864 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g38610.1 -3 0.0 703 395/554 (71%) 13108.m04097 protein pentatricopeptide, putative
TAIR PP10 AT1G26900.1 -3 4e-109 358 193/458 (42%) Pentatricopeptide repeat (PPR) superfamily protein | chr1:9319756-9321474 REVERSE LENGTH=572