MLOC_56470 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains395.913256.72264.248265.821
LEAShoots from the seedlings (10 cm shoot stage)122.63150.950977.916764.4953
INF1Young developing inflorescences (5mm)260.928236.07236.433185.364
INF2Developing inflorescences (1-1.5 cm)125.844113.968141.335123.629
ROORoots from the seedlings (10 cm shoot stage)402.971215.713343.75260.606
NODDeveloping tillers at six leaf stage, 3rd internode10.88019.244736.904735.4461
CAR5Developing grain, bracts removed (5 DPA)118.645123.326122.649106.889
CAR15Developing grain, bracts removed (15 DPA)36.761534.053932.413274.7658



CDS Structure of MLOC_56470






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56470.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368674NoneNoneNoneNone
MLOC_56470.1CUST_3614_PI427708080AvailableAvailablecontig_40864 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g38959.1 +2 1e-110 332 164/183 (90%) 13111.m03833 protein 40S ribosomal protein S9-2, putative, expressed
TAIR PP10 AT5G39850.1 +2 1e-107 324 164/187 (88%) Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197