MLOC_56440 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1583010.09601950.3413520.150793
LEAShoots from the seedlings (10 cm shoot stage)000.04310140.029001
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)000.02284030.0155244
ROORoots from the seedlings (10 cm shoot stage)5.025523.101943.278473.0705
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)00.020888900.0551929



CDS Structure of MLOC_56440






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56440.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56440.1CUST_13522_PI427708080AvailableAvailablecontig_40829 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g37920.1 +1 0.0 664 443/549 (81%) 13110.m03458 protein MATE efflux family protein, putative, expressed
TAIR PP10 AT4G23030.1 +1 9e-138 422 274/449 (61%) MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502