MLOC_56431 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.941238.984843.077539.0207
LEAShoots from the seedlings (10 cm shoot stage)41.751137.436333.052934.1485
INF1Young developing inflorescences (5mm)27.926325.167325.602522.2867
INF2Developing inflorescences (1-1.5 cm)26.960229.181631.836532.5653
ROORoots from the seedlings (10 cm shoot stage)18.719334.85930.396442.3194
NODDeveloping tillers at six leaf stage, 3rd internode40.183133.360233.1233125.182
CAR5Developing grain, bracts removed (5 DPA)35.388635.577136.345335.8397
CAR15Developing grain, bracts removed (15 DPA)14.478514.00714.034832.8284



CDS Structure of MLOC_56431






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56431.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252148.1NoneNoneNoneNone
MLOC_56431.2CUST_18140_PI427708080AvailableAvailablecontig_40741 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g06710.1 +1 0.0 747 400/566 (71%) 13107.m00644 protein tetratricopeptide repeat, putative, expressed
TAIR PP10 AT5G21990.1 +1 0.0 548 302/568 (53%) | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554