MLOC_56421 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains41.695241.688837.552247.3801
LEAShoots from the seedlings (10 cm shoot stage)23.99237.7360811.013613.2949
INF1Young developing inflorescences (5mm)87.631468.628557.0769.0858
INF2Developing inflorescences (1-1.5 cm)49.437558.50756.95366.1383
ROORoots from the seedlings (10 cm shoot stage)21.726438.481137.586853.3481
NODDeveloping tillers at six leaf stage, 3rd internode0.5197830.6237450.8256092.33026
CAR5Developing grain, bracts removed (5 DPA)33.779532.788932.228335.9082
CAR15Developing grain, bracts removed (15 DPA)4.093063.439833.9631510.1081



CDS Structure of MLOC_56421






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56421.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365655NoneNoneNoneNone
MLOC_56421.5CUST_3604_PI427708080AvailableAvailablecontig_40813 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g37006.2 +3 8e-95 292 181/242 (75%) 13109.m03662 protein protein of unknown function domain containing protein, expressed
TAIR PP10 AT1G76010.1 +3 2e-57 196 138/187 (74%) Alba DNA/RNA-binding protein | chr1:28528505-28530488 REVERSE LENGTH=350