MLOC_56414 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.62664.50874.412855.30401
LEAShoots from the seedlings (10 cm shoot stage)4.664182.60354.207062.89237
INF1Young developing inflorescences (5mm)1.976232.496313.092342.2992
INF2Developing inflorescences (1-1.5 cm)1.0121.429171.473281.52086
ROORoots from the seedlings (10 cm shoot stage)9.539244.897694.645675.60276
NODDeveloping tillers at six leaf stage, 3rd internode10.004111.464115.723430.7286
CAR5Developing grain, bracts removed (5 DPA)2.463432.685423.224152.88797
CAR15Developing grain, bracts removed (15 DPA)0.5390310.3940510.2764891.08813



CDS Structure of MLOC_56414






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56414.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368260NoneNoneNoneNone
MLOC_56414.1CUST_3602_PI427708080AvailableAvailablecontig_408062 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39230.1 -1 0.0 592 311/384 (81%) 13109.m03928 protein prephenate dehydratase domain containing protein, expressed
TAIR PP10 AT1G08250.1 -1 0.0 560 298/400 (75%) | Symbols: ADT6 | arogenate dehydratase 6 | chr1:2588994-2590235 REVERSE LENGTH=413