MLOC_56391 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2259630.2729310.2404170.252949
LEAShoots from the seedlings (10 cm shoot stage)0.219210.1849830.2209330.179195
INF1Young developing inflorescences (5mm)0.6253410.5671250.8809520.557427
INF2Developing inflorescences (1-1.5 cm)0.788250.6076890.7562090.747648
ROORoots from the seedlings (10 cm shoot stage)0.3234760.1964640.2480320.261088
NODDeveloping tillers at six leaf stage, 3rd internode0.08660320.05053760.0572340.162848
CAR5Developing grain, bracts removed (5 DPA)0.4200020.5084140.7410160.51182
CAR15Developing grain, bracts removed (15 DPA)0.1978260.2110070.2181440.468791



CDS Structure of MLOC_56391






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56391.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373185NoneNoneNoneNone
MLOC_56391.3CUST_3599_PI427708080AvailableAvailablecontig_40784 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g44480.1 -2 0.0 912 444/565 (79%) 13102.m04965 protein pentatricopeptide, putative
TAIR PP10 AT5G39350.1 -2 1e-169 519 287/637 (45%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15750929-15752962 FORWARD LENGTH=677