MLOC_56387 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.157136.782735.144141.5426
LEAShoots from the seedlings (10 cm shoot stage)23.695115.779314.824817.6923
INF1Young developing inflorescences (5mm)58.503255.736754.665252.0653
INF2Developing inflorescences (1-1.5 cm)56.489254.42250.999566.1841
ROORoots from the seedlings (10 cm shoot stage)28.570230.667531.660444.4878
NODDeveloping tillers at six leaf stage, 3rd internode11.688212.223610.786850.1548
CAR5Developing grain, bracts removed (5 DPA)53.26454.998357.505761.8106
CAR15Developing grain, bracts removed (15 DPA)10.187110.777710.155725.7225



CDS Structure of MLOC_56387






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56387.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252449.1NoneNoneNoneNone
MLOC_56387.1CUST_3597_PI427708080AvailableAvailablecontig_407802 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46560.2 -1 0.0 867 451/553 (82%) 13105.m04975 protein RAN GTPase-activating protein 1, putative, expressed
TAIR PP10 AT5G19320.1 -1 0.0 615 336/549 (61%) | Symbols: RANGAP2 | RAN GTPase activating protein 2 | chr5:6505310-6506947 REVERSE LENGTH=545