MLOC_56349 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.659171.351258.691754.1362
LEAShoots from the seedlings (10 cm shoot stage)34.809434.235329.015528.9912
INF1Young developing inflorescences (5mm)59.831258.01449.039647.0736
INF2Developing inflorescences (1-1.5 cm)60.221966.272150.893264.4151
ROORoots from the seedlings (10 cm shoot stage)17.799340.66225.883345.5992
NODDeveloping tillers at six leaf stage, 3rd internode16.244916.74849.3439753.8654
CAR5Developing grain, bracts removed (5 DPA)63.345357.232563.075457.3209
CAR15Developing grain, bracts removed (15 DPA)20.987219.737920.969844.8858



CDS Structure of MLOC_56349






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56349.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56349.1CUST_13508_PI427708080AvailableAvailablecontig_40746 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g44520.1 +2 0.0 876 441/484 (91%) 13102.m04971 protein OsSub19 - Putative Subtilisin homologue, expressed
TAIR PP10 AT4G20850.1 +2 0.0 753 368/480 (77%) | Symbols: TPP2 | tripeptidyl peptidase ii | chr4:11160935-11169889 REVERSE LENGTH=1380