MLOC_56339 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.084031.796461.619631.83244
LEAShoots from the seedlings (10 cm shoot stage)1.681950.04221330.285490.550294
INF1Young developing inflorescences (5mm)5.531685.186224.767794.60359
INF2Developing inflorescences (1-1.5 cm)5.063847.630276.92667.51004
ROORoots from the seedlings (10 cm shoot stage)0.6679341.213951.0851.23623
NODDeveloping tillers at six leaf stage, 3rd internode0.199940.1540340.2435840.480699
CAR5Developing grain, bracts removed (5 DPA)5.398926.086395.08435.62602
CAR15Developing grain, bracts removed (15 DPA)0.2143530.118450.2610160.478558



CDS Structure of MLOC_56339






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56339.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56339.3CUST_13507_PI427708080AvailableAvailablecontig_40740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g13170.1 -2 6e-179 526 278/458 (61%) 13104.m01208 protein OsFBD10 - F-box and FBD domain containing protein, expressed
TAIR PP10 AT1G13570.1 -2 1e-11 68 94/398 (24%) F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416