MLOC_56313 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.052659200.02841820.0376706
LEAShoots from the seedlings (10 cm shoot stage)12.524626.223316.33611.4604
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.014964300.02090440.0244137
ROORoots from the seedlings (10 cm shoot stage)0.2278470.2094880.1320090.194281
NODDeveloping tillers at six leaf stage, 3rd internode0.1367740.07607442.762981.31927
CAR5Developing grain, bracts removed (5 DPA)0.01858660.016650200.0149237
CAR15Developing grain, bracts removed (15 DPA)51.569750.569745.024983.1362



CDS Structure of MLOC_56313






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56313.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374587NoneNoneNoneNone
MLOC_56313.1CUST_18138_PI427708080AvailableAvailablecontig_40722 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01280.2 +2 2e-19 87 56/71 (79%) 13105.m00053 protein expressed protein
TAIR PP10 AT5G08391.1 +2 3e-13 69 25/50 (50%) Protein of unknown function (DUF 3339) | chr5:2699357-2699566 FORWARD LENGTH=69