MLOC_56298 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.09155280.03651540.0928843
LEAShoots from the seedlings (10 cm shoot stage)00.04257630.173190.114467
INF1Young developing inflorescences (5mm)0.0723495000.0715441
INF2Developing inflorescences (1-1.5 cm)0.07707170.06975530.135540.0975795
ROORoots from the seedlings (10 cm shoot stage)00.095040800.303117
NODDeveloping tillers at six leaf stage, 3rd internode0.09503750.1210160.126670.416423
CAR5Developing grain, bracts removed (5 DPA)0.08554050.2161430.2008510.168953
CAR15Developing grain, bracts removed (15 DPA)0.437050.1374650.5702890.762204



CDS Structure of MLOC_56298






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56298.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56298.1CUST_13500_PI427708080AvailableAvailablecontig_40706 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g30190.1 +2 3e-35 145 70/196 (36%) 13107.m03041 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----