MLOC_56296 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains73.3759116.566110.38989.7925
LEAShoots from the seedlings (10 cm shoot stage)142.912149.353143.999110.988
INF1Young developing inflorescences (5mm)136.406147.299151.365103.778
INF2Developing inflorescences (1-1.5 cm)153.726144.301145.342142.853
ROORoots from the seedlings (10 cm shoot stage)64.7689104.91894.4091100.539
NODDeveloping tillers at six leaf stage, 3rd internode107.897102.99797.2902306.768
CAR5Developing grain, bracts removed (5 DPA)116.083109.642116.2195.067
CAR15Developing grain, bracts removed (15 DPA)93.230789.198389.0599175.927



CDS Structure of MLOC_56296






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56296.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355087NoneNoneNoneNone
MLOC_56296.2CUST_18136_PI427708080AvailableAvailablecontig_40681 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44860.8 +3 0.0 843 412/456 (90%) 13108.m04884 protein aminopeptidase, putative, expressed
TAIR PP10 AT1G63770.5 +3 0.0 1289 644/960 (67%) Peptidase M1 family protein | chr1:23657791-23664243 REVERSE LENGTH=1013