MLOC_56291 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04029860.2760690.2771580.21701
LEAShoots from the seedlings (10 cm shoot stage)0.271260.1299190.442020.242559
INF1Young developing inflorescences (5mm)0.2748370.3167030.1716790.230287
INF2Developing inflorescences (1-1.5 cm)0.6501270.6161190.5674750.739608
ROORoots from the seedlings (10 cm shoot stage)0.1489250.2613650.3820550.293091
NODDeveloping tillers at six leaf stage, 3rd internode0.02406450.2551950.07857810.602512
CAR5Developing grain, bracts removed (5 DPA)0.8007350.7620130.7179040.758206
CAR15Developing grain, bracts removed (15 DPA)0.5583020.3392980.3072021.03699



CDS Structure of MLOC_56291






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56291.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56291.1CUST_13499_PI427708080AvailableAvailablecontig_40699 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g38020.1 +2 4e-70 246 122/267 (46%) 13112.m03917 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----